List of publications available on my Google Scholar profile and my Web of Science profile.


Selected Papers

Predicting cytopenias, progression, and survival in patients with clonal cytopenia of undetermined significance: a prospective cohort study.
The Lancet Haematology, 11(1), e51–e61, 2024.
C. Cargo, E. Bernard, T. Beinortas, K.L. Bolton, et al.


Clonal Hematopoiesis in Patients With Cancer: How Much Should We Care?
JCO Precision Oncology, 7:e2300417, 2023.
A. Renneville, E. Bernard, J.B. Micol.


Placing the patient at the heart of discovery science.
European Journal of Cancer, 193:113306, 2023.
M. Aldea, E. Bernard, C. Swanton, F. Andre.


Integrated genomic and transcriptomic analysis improves disease classification and risk stratification of MDS with ring sideroblasts.
Clinical Cancer Research, 29(20):4256-4267, 2023.
G. Todisco, M.Creignou, E. Bernard, et al.


Therapy-related myelodysplastic syndromes in the genomics era.
Bulletin du cancer, S0007-4551(23)00277-1, 2023.
A. Renneville, E. Bernard and J-B. Micol


Novel precision medicine approaches and treatment strategies in hematological malignancies.
Journal of internal medicine, 00: 1–24, 2023.
R. Rosenquist, E. Bernard, T. Erkers, et al.


Liquid Biopsies for Circulating Tumor DNA Detection May Reveal Occult Hematologic Malignancies in Patients With Solid Tumors.
JCO Precision Oncology, 7:e2200583, 2023.
M. Aldea, M. Tagliamento, A. Bayle, ... E. Bernard ... , A. Italiano, JB. Micol.


Postazacitidine clone size predicts long-term outcome of patients with myelodysplastic syndromes and related myeloid neoplasms.
Blood advances, 7(14), 3624–3636, 2023.
Y. Nannya, M. Tobiasson, S. Sato, E. Bernard, et al.


Patient-Derived iPSCs Faithfully Represent the Genetic Diversity and Cellular Architecture of Human Acute Myeloid Leukemia.
Blood cancer discovery, 4(4), 318–335, 2023.
A.G. Kotini, S. Carcamo, N. Cruz-Rodriguez, ... E. Bernard ... , D. Hasson, E.P. Papapetrou.


Unified classification and risk-stratification in Acute Myeloid Leukemia.
Nature Communications, 13, 4622, 2022.
Y. Tazi, J. E. Arango-Ossa, Y. Zhou, E. Bernard, et al.


Molecular International Prognostic Scoring System for Myelodysplastic Syndromes.
NEJM Evidence, 1 (7), 2022.
E. Bernard, H. Tuechler, P. G. Greenberg, et al.
R Package. Web Calculator. Reproduce.


Patient-specific MDS-RS iPSCs define the mis-spliced transcript repertoire and chromatin landscape of SF3B1-mutant HSPCs.
Blood Advances, 6 (10): 2992–3005, 2022.
G. Asimomitis, A. G. Deslauriers, A. G Kotini, E. Bernard, et al.


ZBTB33 is mutated in clonal hematopoiesis and myelodysplastic syndromes and impacts RNA Splicing.
Blood Cancer Discovery, 2(5), 500–517, 2021.
E.M. Beauchamp, M. Leventhal, E. Bernard, et al.


Interplay between chromosomal alterations and gene mutations shapes the evolutionary trajectory of clonal hematopoiesis.
Nature Communications, 12, 338, 2021.
T. Gao, R. Ptashkin, K. L. Bolton, ... , E. Bernard, ... , S. M. Devlin, E. Papaemmanuil.


Cancer therapy shapes the fitness landscape of clonal hematopoiesis.
Nature Genetics, 52, 1219–1226, 2020.
K. L. Bolton, R. N. Ptashkin, T. Gao, ... , E. Bernard, ... , A. Zehir, E. Papaemmanuil.


Implications of TP53 Allelic State for Genome Stability, Clinical Presentation and Outcomes in Myelodysplastic Syndromes.
Nature Medicine, 26, 1549–1556, 2020.
E. Bernard, Y. Nannya, R. P. Hasserjian, et al.
Preprint. Reproduce.


Stability and uniqueness of clonal immunoglobulin CDR3 sequences for MRD tracking in multiple myeloma.
Am. J. Hematol., doi: 10.1002/ajh.25641, 2019.
E. H. Rustad, K.Misund, E. Bernard, et al.


Multifaceted modes of action of azacytidine: a riddle wrapped up in an enigma.
Leukemia & Lymphoma, 12:1-5, 2019.
E. Lamprianidou, E. Zoulia, E. Bernard, C. Kordella, M. Papoutselis, Z. Bezirgiannidou, G. Vrachiolias, E. Papaemmanuil and I. Kotsianidis.


A molecular atlas of the developing ectoderm defines neural, neural crest, placode and non-neural progenitor identity in vertebrates.
PLoS Biology, 15(10): e2004045, 2017.
J.-L. Plouhinec, S. Medina-Ruiz, C. Borday, E. Bernard, J.-P. Vert, M. B. Eisen, R. M. Harland and A. H. Monsoro-Burq.


Kernel multitask regression for toxicogenetics.
Molecular Informatics, 36(10), 2017.
E. Bernard, Y. Jiao, E. Scornet, V. Stoven, T. Walter and J.-P. Vert.
Preprint. R Package. Reproduce.


A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples.
BMC Bioinformatics, i16:262, 2015.
E. Bernard, L. Jacob, J. Mairal, E. Viara and J.-P. Vert.
Preprint.


Efficient RNA isoform identification and quantification from RNA-seq data with network flows.
Bioinformatics, 30(17):2447-2455, 2014.
E. Bernard, L. Jacob, J. Mairal and J.-P. Vert.
Preprint.


Clustering of maxima: spatial dependencies among heavy rainfall in france.
Journal of Climate, 26, 7929-7937, 2013.
E. Bernard, P. Naveau, M. Vrac and O. Mestre.


Geostrophic turbulence near rapid changes in stratification.
Physics of Fluids, 25, 046601, 2013.
K.S. Smith and E. Bernard.

Thesis

E. Bernard. Deciphering splicing with sparse regression techniques in the era of high-throughput RNA sequencing.
Phd thesis, 2016.